Function reference

All functions

edma_colors() plot_edma_colors()

Check and manipulate colors

read_xyz() write_xyz() edma_simulate_data() print(<edma_data>) dim(<edma_data>) dimnames(<edma_data>) landmarks() dimensions() specimens() `landmarks<-`() `dimensions<-`() `specimens<-`() subset(<edma_data>) `[`(<edma_data>) stack(<edma_data>) as.matrix(<edma_data>) as.data.frame(<edma_data>) as.array(<edma_data>) as.edma_data() combine_data() combine_data4() plot_2d() plot_ord() plot_clust() plot(<edma_data>) as.dist(<edma_data>)

Functions for EDMA data objects

edma_fdm() get_influence() plot(<edma_influence>) get_fdm() global_test() confint(<edma_dm>) print(<edma_fdm>) landmarks(<edma_fdm>) dimensions(<edma_fdm>) plot_ci() plot_test() plot(<edma_dm>) plot_2d(<edma_dm>) plot_3d(<edma_dm>) plot_ord(<edma_fdm>) plot_clust(<edma_fdm>)

Form difference

edma_fit() Meanform() SigmaKstar() get_fm() print(<edma_fit_np>) confint(<edma_fit>) as.edma_data(<edma_fit>) plot_3d() plot(<edma_fit>) plot_2d(<edma_fit>) plot_ord(<edma_fit>) plot_clust(<edma_fit>) as.dist(<edma_fit>) stack(<dist>)

Nonparametric EDMA fit

edma_gm() get_gm() edma_gdm() get_gdm() print(<edma_gm>) print(<edma_gdm>) global_test(<edma_gm>) global_test(<edma_gdm>) landmarks(<edma_gdm>) dimensions(<edma_gdm>) plot_ord(<edma_gdm>) plot_clust(<edma_gdm>)

Growth difference

edma_scale()

Scale an EDMA data object

edma_sdm() get_sdm() print(<edma_sdm>) Z_test() landmarks(<edma_sdm>) dimensions(<edma_sdm>) confint(<edma_sdm>) get_influence(<edma_sdm>) plot_Ztest()

Shape difference

EDMAinR-package EDMAinR

Euclidean Distance Matrix Analysis in R

gpa_fit() print(<gpa_fit>)

GPA

.edma_fit_np() .Ttest_data() .gpa_fit()

Internal functions

edma_fdm_report() edma_gdm_report()

EDMA Report