EDMA Report — report • EDMAinR

Writes output into a text file following close the WinEDMA implementation.

Usage

edma_fdm_report(numerator, denominator, output="edma_output.txt",
  landmarks=NULL, B=0, level=0.95, ref_denom=TRUE, mix=FALSE,
  digits=4)

edma_gdm_report(numerator_yng, numerator_old,
    denominator_yng, denominator_old, output="edma_output.txt",
    landmarks=NULL, B=0, level=0.95, ref_denom=TRUE, mix=FALSE,
    digits=4)

Arguments

numerator, denominator, numerator_yng, numerator_old, denominator_yng, denominator_old: input file names or EDMA data objects.
output: path and file name for the output file.
landmarks: a subset of landmarks to be specified, or NULL (use all landmarks).
B: number of bootstrap samples.
level: confidence level.
ref_denom: logical, when TRUE, the denominator is used as reference object (its form matrix is fixed when calculating bootstrap comparing to the other object).
mix: logical, to use mixed bootstrap (numeriator and denominator populations are mixed with replacement) or not (only the non-reference population is resampled with replacement).
digits: significant digits to print.

Examples

if (FALSE) {

edma_fdm_report(
    numerator = system.file(
        "extdata/crouzon/Crouzon_P0_Global_NON-MUT.xyz",
        package="EDMAinR"),
    denominator = system.file(
        "extdata/crouzon/Crouzon_P0_Global_MUT.xyz",
        package="EDMAinR"),
    output="edma_output.txt",
    landmarks=c("locc", "lpfl", "lpsq", "lpto", "lsqu",
        "rocc", "rpfl", "rpsq", "rpto", "rsqu"),
    B=1000,
    level=0.9,
    ref_denom=FALSE,
    mix=TRUE)

}