Personal website revamped

February 27, 2016 Etc site

It all started with my site based on the SinglePaged theme broken by the Jekyll 3.0 update on GitHub pages. Although Karthik Raman sent a nice pull request with a fix, I opted to revamp my site instead of fixing the old theme.

I really liked the old theme, but there were several reasons for the change:

  • Single paged theme made it hard to see in Google analytics who is looking what on the site, because seemingly everyone looked at index.html.
  • After a while, I wanted real blog and subpages, and I felt more comfortable tweaking Bootstrap/Bootswatch based themes after having spent some time last summer setting up DataCloning.org and species.abmi.ca.
  • I also had a web-update repo in the works, so transitioning was really easy (although migrating content and fine tuning took 3 days).

So here is the result. Let me know if you have comments, suggestions. Hopefully the Disqus widget loads properly below.

Statistical computing meets biodiversity conservation and natural resource management

Phylogeny and species traits predict bird detectability

It all started with this paper in Methods in Ecol. Evol. where we looked at detectability of many species. So we wanted to use life history traits to validate our results. But we had to cut the manuscript, and there was this leftover with some neat patterns, but without much focus. It took a few years, and the most positive peer-review experience ever, and the paper is now early view in Ecography. This post is a quick summary of the goodies stuffed inside the lhreg R package that makes the whole analysis reproducible, and provides some functions for similar PGLMM models.

ABMI (6) ARU (1) C (1) CRAN (1) Hungary (2) JOSM (2) PVA (2) PVAClone (1) QPAD (1) R (18) R packages (1) bioacoustics (1) biodiversity (1) birds (2) course (2) data (1) data cloning (4) dclone (3) dependencies (1) detect (2) detectability (1) footprint (3) forecasting (1) functions (3) intrval (3) lhreg (1) mefa4 (1) monitoring (2) pbapply (5) phylogeny (1) plyr (1) poster (2) processing time (2) progress bar (4) publications (2) report (1) sector effects (1) single visit (1) site (1) slides (2) special (3) species (1) trend (1) tutorials (2) video (4)