Hierarchical models for conservation biologists made easy

February 25, 2016 Etc R course data cloning dclone

One-day short course at NACCB congress in Madison, WI, on July 16th, with Peter Solymos and Subhash Lele.

We aim this training course towards conservation professionals who need to understand and feel comfortable with modern statistical and computational tools used to address conservation issues. Conservation science needs to be transparent and credible to be able to make an impact and translate information and knowledge into action.

Communicating scientific methods and results require a full understanding of concepts, assumptions and implications. However, most ecological data used in conservation decision making are inherently noisy, both due to intrinsic stochasticity found in nature and extrinsic factors of the observation processes. We are often faced with the need to combine multiple studies across different spatial and temporal resolutions. Natural processes are often hierarchical. Missing data, measurement error, soft data provided by expert opinion need to be accommodated during the analysis. Data are often limited (rare species, emerging threats), thus small sample corrections are important for properly quantify uncertainty.

Hierarchical models are useful in such situations. Fitting these models to data, however, is difficult. Advances in the last couple of decades in statistical theory and software development have fortunately made the data analysis easier, although not trivial. In this course, we propose to introduce statistical and computational tools for the analysis of hierarchical models (including tools for small sample inference) specifically in the context of conservation issues.

We will teach both Bayesian and Likelihood based approaches to these models using freely available software developed by the tutors. By presenting both Bayesian and Likelihood based approaches participants will be able to go beyond the rhetorics of philosophy of statistics and use the tools with full understanding of their assumptions and implications. This will help ensure that when they use the statistical techniques, be they Bayesian or Frequentist, they will be able to explain and communicate the results to the managers and general public appropriately.

Check out previous courses at at DataCloning.org.

UPDATE 2016/06/14

Congress registration is now open here closed.

The congress program is out (see here).

UPDATE 2016/08/12

Course notes are now on the course website: http://datacloning.org/courses/2016/madison/.

Statistical computing meets biodiversity conservation and natural resource management

What is new in the intrval R package?

An update (v 0.1-1) of the intrval package was recently published on CRAN. The package simplifies interval related logical operations (read more about the motivation in this post). So what is new in this version? Some of the inconsistencies in the 1st CRAN release have been cleaned up, and I have been pushed hard (see GitHub issue to implement all the 16 interval-to-interval operators. These operators define the open/closed nature of the lower/upper limits of the intervals on the left and right hand side of the o in the middle as in c(a1, b1) %[]o[]% c(a2, b2).

ABMI (6) ARU (1) C (1) CRAN (1) Hungary (1) JOSM (2) PVA (1) QPAD (1) R (15) R packages (1) bioacoustics (1) biodiversity (1) birds (2) course (2) data (1) data cloning (3) dclone (3) dependencies (1) detect (2) footprint (3) forecasting (1) functions (3) intrval (2) mefa4 (1) monitoring (2) pbapply (4) plyr (1) poster (2) processing time (1) progress bar (3) publications (1) report (1) sector effects (1) single visit (1) site (1) slides (2) special (3) species (1) trend (1) tutorials (2) video (4)