January 26, 2017 Code R functions special intrval
An update (v 0.1-1) of the intrval package was recently published on CRAN. The package simplifies interval related logical operations (read more about the motivation in this post).
So what is new in this version? Some of the inconsistencies in the 1st CRAN release have been cleaned up, and I have been pushed hard (see GitHub issue to implement all the 16
interval-to-interval operators.
These operators define the open/closed nature of the lower/upper
limits of the intervals on the left and right hand side of the o
in the middle as in c(a1, b1) %[]o[]% c(a2, b2).
| Interval 1: | Interval 2: [] |
[) |
(] |
() |
|---|---|---|---|---|
[] |
%[]o[]% |
%[]o[)% |
%[]o(]% |
%[]o()% |
[) |
%[)o[]% |
%[)o[)% |
%[)o(]% |
%[)o()% |
(] |
%(]o[]% |
%(]o[)% |
%(]o(]% |
%(]o()% |
() |
%()o[]% |
%()o[)% |
%()o(]% |
%()o()% |
The overlap of two closed intervals, [a1, b1] and [a2, b2],
is evaluated by the %[]o[]% (%[o]% is an alias)
operator (a1 <= b1, a2 <= b2).
Endpoints can be defined as a vector with two values
(c(a1, b1)) or can be stored in matrix-like objects or a lists
in which case comparisons are made element-wise.
If lengths do not match, shorter objects are recycled.
These value-to-interval operators work for numeric (integer, real)
and ordered vectors, and object types which are measured at
least on ordinal scale (e.g. dates).
Note that interval endpoints
are sorted internally thus ensuring the conditions
a1 <= b1 and a2 <= b2 is not necessary.
c(2, 3) %[]o[]% c(0, 1)
list(0:4, 1:5) %[]o[]% c(2, 3)
cbind(0:4, 1:5) %[]o[]% c(2, 3)
data.frame(a=0:4, b=1:5) %[]o[]% c(2, 3)
If lengths do not match, shorter objects are recycled. These value-to-interval operators work for numeric (integer, real) and ordered vectors, and object types which are measured at least on ordinal scale (e.g. dates).
%)o(% is used for the negation of two closed interval overlap (%[o]%),
directional evaluation is done via the operators
%[<o]% and %[o>]%.
The overlap of two open intervals
is evaluated by the %(o)% (alias for %()o()%).
%]o[% is used for the negation of two open interval overlap,
directional evaluation is done via the operators
%(<o)% and %(o>)%.
Overlap operators with mixed endpoint do not have
negation and directional counterparts.
| Equal | Not equal | Less than | Greater than |
|---|---|---|---|
%[o]% |
%)o(% |
%[<o]% |
%[o>]% |
%(o)% |
%]o[% |
%(<o)% |
%(o>)% |
Thanks for all the feedback so far and please keep’em coming: leave a comment below or use the issue tracker to provide feedback or report a problem.
In a recent paper entitled “Lessons learned from comparing spatially explicit models and the Partners in Flight approach to estimate population sizes of boreal birds in Alberta, Canada” we developed improved, spatially explicit models for 81 land bird species in northern Alberta, Canada. We then compared these estimates of bird abundance to a commonly-used but non-spatially explicit estimate by Partners in Flight (PIF v 3.0) that’s based on the North American Breeding Bird Survey (BBS) data set. The publication is a result of years of collaboration between the ABMI, Boreal Avian Modelling (BAM) project, Canadian Wildlife Service (Environment and Climate Change Canada), and United States Geological Survey.
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