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Changelog

Source: NEWS.md

Version 0.3-12 – July 12, 2025

  • Add Authors@R field in DESCRIPTION.
  • Fix documentation.

Version 0.3-11 – May 20, 2024

CRAN release: 2024-05-20

  • Use bibentry in CITATION.

Version 0.3-10 – May 19, 2024

  • Maintainer email changed to personal email.

Version 0.3-9 – Sep 8, 2022

CRAN release: 2022-09-12

  • Addressing Matrix 1.5-0 deprecation issue.

Version 0.3-8 – Oct 6, 2021

CRAN release: 2021-10-06

  • Use DOI to JSS article instead of URL. # Version 0.3-7 – Feb 28, 2020

  • stringsAsFactors = TRUE added to data.frame() calls to prepare for R-devel changes.

Version 0.3-6 – Jul 20, 2019

CRAN release: 2019-06-21

  • find_max and find_min are much now faster.

Version 0.3-5 – Mar 24, 2018

CRAN release: 2018-03-25

Version 0.3-4 – Oct 12, 2016

CRAN release: 2016-10-14

  • New functions: '%notin%', the negation of '%in%'; reclass for reclassifying factors; redistribute for redistributing values in a matrix.
  • inst/CITATION file updated.

Version 0.3-3 – Feb 29, 2016

CRAN release: 2016-03-01

  • nonDuplicated now uses drop=FALSE to prevent 1-column inputs to loose their dimensions.
  • New function: compare_sets to compare sets.
  • New function: find_max and find_min to find max/min index and value for rows of a matrix.
  • pbapply is now a dependency.

Version 0.3-2 – Nov 21, 2015

CRAN release: 2015-11-22

  • New function: r2rmd to parse an ordinary R source file and return an Rmd file by trimming double hashes and wrapping code chunks.
  • Vignette removed from package, migrated to development site on GitHub.

Version 0.3-1 – Nov 7, 2013

CRAN release: 2014-05-16

  • stack method for Mefa objects: column labels for @taxa tables fixed.
  • New functions: pasteDate, paste0date, nameAlnum. These were added to facilitate common character operations (versioning files, cleaning up taxonomic names).

Version 0.3-0 – Sept 25, 2013

CRAN release: 2013-10-08

  • Spell check completed using utils:::aspell.
  • Import methods pkg in namespace to satisfy R 3.0.2 checks.
  • Depends: R (>= 2.14.0) because vignette directory has moved.

Version 0.2-9 – July 11, 2013

CRAN release: 2013-07-11

  • Xtab: 1-row/col matrices dropped dimnames – now fixed.
  • Vignette moved to vignettes from inst/doc.

Version 0.2-8 – July 6, 2012

CRAN release: 2012-07-07

  • mbind2: inner set is based on x+y instead of left join x. Methods for matrix and sparse matrix classes, but not for Mefa where the sum is not trivial.
  • nonDuplicated gained na.rm argument to handle possible duplicates in row names.

Version 0.2-7 – May 2, 2012

CRAN release: 2012-05-14

  • inst/COPYING removed.
  • stack method added to Mefa class.
  • groupSums, groupMeans: failed when join was "inner" and both @samp and @taxa slots of the new object were NULL. Check on NULL attribute table related join type is now relaxed for object class Mefa (reported by D. Stralberg).
  • mbind uses drop=TRUE to protect single column/row cases.

Version 0.2-6 – March 19, 2012

CRAN release: 2012-03-19

  • Rd link to Matrix:::xtabs removed (sparse=TRUE is in stats:::xtabs). Reported by Uwe Ligges.

Version 0.2-5 – October 18, 2011

  • Startup message: line break removed.

Version 0.2-4 – August 23, 2011

CRAN release: 2011-10-17

  • groupMeans: NA handling changed, mean is calculated as dividing by the non-NA values when collapsing.

Version 0.2-3 – July 9, 2011

CRAN release: 2011-08-23

  • packageStartupMessage used in zzz.R .onAttach.
  • Typos fixed in vignette and help pages.
  • 1x1 dim issues fixed again using drop=FALSE at many places (Mefa, <-, [, mbind).
  • typo corrected in mbind for Mefa objects that left TAXAPART temp variable in result.
  • @samp/@taxa table handling in mbind for Mefa objects is revised, not using default merge(..., all=TRUE).
  • Xtab: lhs must be numeric.

Version 0.2-2 – May 13, 2011

CRAN release: 2011-07-23

  • Allowing for 0 and 1 row/col Mefa objects ('xtab<-' and '[').
  • nonDuplicated finds y in data frame and patent frame first.

Version 0.2-1 – February 14, 2011

CRAN release: 2011-05-15

  • Melt function added to reverse side effects of Xtab.
  • Docs for Melt added (Rd, tests, vignette).

Version 0.2-0 – February 7, 2011

CRAN release: 2011-02-10

  • First public CRAN release.

Version 0.1-2 – January 26, 2011

  • nonDuplicated function added.
  • segmented Xtab output implemented as list of sparse matrices.

Version 0.1-1 – January 25, 2011

  • S4 classes working properly.
  • /tests dir added to pkg tree.
  • Xtab class is redundant, use dgCMatrix class instead.
  • A vignette with design decisions added, it also has the performance comparison.
  • mbind method for binding matrices added with a ‘left join’ implementation.
  • Rd files added, needs proofreading.

Version 0.1-0 – January 20, 2011

  • Start development for S4 classes.